Molecular Dynamic Simulation on Gromacs Software

Molecular Dynamic Simulation on Gromacs Software, available at Free, has an average rating of 3.6, with 8 lectures, based on 62 reviews, and has 3643 subscribers.

You will learn about Understand what Molecular Dynamics Simulation in Drug Discovery How thermodynamics is involved Parameters of Thermodynamics involved in Molecular Dynamics Simulation GROMACS Software: Installation, Parameters involved and Execution This course is ideal for individuals who are Enthusiasts that are interested in Molecular Dynamics Simulation or Bachelors, Masters and PhD Students It is particularly useful for Enthusiasts that are interested in Molecular Dynamics Simulation or Bachelors, Masters and PhD Students.

Enroll now: Molecular Dynamic Simulation on Gromacs Software

Summary

Title: Molecular Dynamic Simulation on Gromacs Software

Price: Free

Average Rating: 3.6

Number of Lectures: 8

Number of Published Lectures: 8

Number of Curriculum Items: 8

Number of Published Curriculum Objects: 8

Original Price: Free

Quality Status: approved

Status: Live

What You Will Learn

Understand what Molecular Dynamics Simulation in Drug Discovery
How thermodynamics is involved
Parameters of Thermodynamics involved in Molecular Dynamics Simulation
GROMACS Software: Installation, Parameters involved and Execution

Who Should Attend

Enthusiasts that are interested in Molecular Dynamics Simulation
Bachelors, Masters and PhD Students

Target Audiences

Enthusiasts that are interested in Molecular Dynamics Simulation
Bachelors, Masters and PhD Students

Students perform Molecular Dynamics Simulation without understanding why they are setting such parameter and why does those parameters even exist in the first place. We have designed the course to provide a brief introduction of Molecular Dynamics Simulation and why different parameter exists in its simulation. An introduction to the software is provided with an explanation as to why we have selected this software in particular. Furthermore, how to install, operate and understand the different parameters of software is also involved. In this course we will be subtly answering those unasked questions about why this? By the end of this course, you will have a good grasp and understanding of Molecular Dynamics Simulation instead of a general idea. For the study of biomolecules molecular dynamics simulations have become a common technique. Simulations of ever larger systems are carried out, with more realistic boundary conditions and better sampling owing to longer sample durations. Realistic simulations of complicated systems like transmembrane channels have just become possibles.Simulations help us comprehend biological processes and give structural data a dynamic dimension; for example, the transition of the disease-causing prion protein into a harmless protein has been modelled.Molecular dynamics the science of simulating the motions of a system of particles applied to biological macromolecules gives the fluctuations in the relative positions of the atoms in aprotein or in DNA as a function of time.

Course Curriculum

Chapter 1: Introduction

Lecture 1: Introduction of MOLECULAR DYNAMICS SIMULATION

Lecture 2: Introduction of Molecular Dynamics Simulation Software Gromacs

Chapter 2: Commands on Gromacs

Lecture 1: How to Commands on Gromacs for Molecular Dynamics Simulation

Lecture 2: Step of Solvation & ionization for molecular dynamics simulation

Chapter 3: Energy Minimization

Lecture 1: Energy Minimization Step in Molecular Dynamics Simulation

Lecture 2: Equilibration and MD Simulation

Lecture 3: Final Step of MD Simulation

Lecture 4: Analysis Molecular Dynamics Simulation

Instructors

GHAFRAN ALI
Instructor

Rating Distribution

1 stars: 5 votes
2 stars: 5 votes
3 stars: 15 votes
4 stars: 15 votes
5 stars: 22 votes

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